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Irresistibly Indulgent Blackberry Lime Cheesecake Cupcakes

Updated: Jul 6, 2025 · Published: Jun 21, 2025 by Emma Saviani ·

There’s something truly delightful about a dessert that captures the essence of summer in every bite. When I first tasted these Blackberry Lime Cheesecake Cupcakes at a friend’s gathering, I was instantly transported to a sun-soaked afternoon, where the tang of lime met the sweetness of ripe blackberries. Each creamy morsel melts in your mouth, leaving behind a refreshing burst of flavor that makes them irresistible.

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Perfect for any celebration or simply indulging on a quiet weekend, this recipe is a breeze to whip up, even on busy days. With a graham cracker crust providing that satisfying crunch and a marbled blackberry puree adding a pop of color, these cupcakes are as picturesque as they are delicious. Plus, you can easily customize them with different fruit variations or crust alternatives to suit your taste! So grab your apron, and let’s dive into creating these tempting treats that are sure to impress family and friends alike.

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Why are Blackberry Lime Cheesecake Cupcakes irresistible?

Elevated taste: The fusion of tangy lime and sweet blackberry creates a flavor combination that is nothing short of sensational.
Effortless preparation: With simple steps, you’ll have stunning cupcakes ready to impress without stress.
Versatile options: Easily switch up the fruit or crust for a tailored twist—think raspberries or gluten-free options!
Perfect for sharing: Ideal for gatherings, these bite-sized treats ensure everyone gets a taste of summer bliss.
Chill and enjoy: Best served cold, they offer a refreshing treat that’s perfect for warm weather.
Pro tip: These cupcakes pair wonderfully with a drizzle of honey for added sweetness—get inspired and try out the delicious possibilities!

Blackberry Lime Cheesecake Cupcakes Ingredients

• Discover the buttery goodness and fruity sweetness!

For the Crust
• Graham Cracker Crumbs – The base of the cupcake crust; you can use gluten-free crumbs for a suitable option.
• Melted Butter – Binds the graham cracker crumbs and adds richness.

For the Cheesecake Filling
• Cream Cheese (8 oz packages, softened) – The main component providing a rich, creamy texture.
• Granulated Sugar – Sweetens the filling to balance the tartness of the lime.
• Large Eggs – Help bind and enrich the cheesecake, contributing to its structure.
• Vanilla Extract – Adds a deep flavor that complements the fruit.
• Fresh Lime Juice – Brings bright acidity and tang to the filling.
• Lime Zest – Enhances the lime flavor with its aromatic oils.

For the Fruit Layer
• Blackberry Puree (fresh or frozen) – Infuses a delightful fruit flavor; can be substituted with raspberry or strawberry puree for variation.
• Fresh Blackberries (for garnish) – Adds a pop of color and a fresh burst of flavor on top.

Feel free to mix and match as you explore the endless possibilities with these Blackberry Lime Cheesecake Cupcakes!

How to Make Blackberry Lime Cheesecake Cupcakes

  1. Preheat the oven to 325°F (163°C) and line a muffin tin with paper liners to prepare for baking. This ensures easy removal of your delightful cupcakes once they’re baked!
  2. Combine graham cracker crumbs and melted butter in a bowl, then press this mixture into the bottom of each liner. Bake for 8-10 minutes until slightly golden, then cool the crusts completely.
  3. Beat cream cheese and granulated sugar in a mixing bowl until smooth and creamy. This step is crucial to achieve that velvety texture in your cheesecake filling!
  4. Add large eggs one at a time, beating well after each addition until fully incorporated. This helps create a light, airy filling.
  5. Stir in vanilla extract, fresh lime juice, and lime zest to enhance the flavor, making each cupcake a burst of sunshine!
  6. Divide the luscious batter evenly into the muffin cups with the pre-baked crust. Aim for a consistent fill to ensure even baking.
  7. Spoon blackberry puree onto the batter and gently swirl it to create a marbled effect. This adds a beautiful visual touch and an extra layer of fruity flavor.
  8. Bake for 18-20 minutes, or until the edges are set and the centers are slightly jiggly. This ensures the cupcakes have that creamy cheesecake consistency everyone loves.
  9. Cool the cupcakes completely in the tin before transferring them to the fridge for at least 2 hours. This step helps them set perfectly!
  10. Top with fresh blackberries just before serving to add a delightful final touch that enhances both flavor and presentation.

Optional: Drizzle with honey for an extra touch of sweetness!

Exact quantities are listed in the recipe card below.

Expert Tips for Blackberry Lime Cheesecake Cupcakes

• Softened Cream Cheese: Ensure your cream cheese is at room temperature for a silky, smooth cheesecake filling that blends seamlessly.

• Don’t Overbake: Keep an eye on the baking time; you want the center slightly jiggly for that perfect creamy texture in your cupcakes.

• Cooling Time: Allow the cupcakes to cool completely in the tin before refrigerating. This step is critical for achieving the best flavor and texture in your Blackberry Lime Cheesecake Cupcakes.

• Graham Cracker Crust: If going gluten-free, use gluten-free graham cracker crumbs. Press them firmly to avoid a crumbly texture.

• Creative Swirls: Feel free to experiment with different fruit purees, like raspberry or strawberry, for a unique twist on these delicious cupcakes!

• Make Ahead: These cupcakes can be prepped ahead of time and stored in the fridge for up to 5 days, making them perfect for last-minute gatherings.

Blackberry Lime Cheesecake Cupcakes Variations

Embrace your creativity in the kitchen and make these delightful cupcakes your own with simple twists!

  • Berry Mix: Combine blackberries with raspberries or strawberries for a colorful and flavorful medley.
  • Nutty Crust: Swap the graham cracker crust for crushed almond flour and melted coconut oil for a nutty, gluten-free option.
  • Chocolate Drizzle: Elevate the sweetness by adding a rich chocolate drizzle on top after chilling.
  • Citrus Burst: Instead of lime, use lemon juice and zest for a bright, tangy flavor that your taste buds will love.
  • Creamy Swirls: Fold in some white chocolate chips into the batter for decadent pockets of flavor throughout.
  • Spicy Kick: Add a pinch of cayenne or chili powder to the blackberry puree for an unexpected, delightful heat!
  • Decadent Toppings: Finish with whipped cream and a sprinkle of crushed graham crackers for added texture and taste.
  • Mini Cups: Instead of full-size cupcakes, make mini versions for bite-sized delights that are perfect for sharing at parties.

What to Serve with Blackberry Lime Cheesecake Cupcakes?

Imagine a spring picnic or a summer garden party where these cupcakes can shine as the sweet star of the show, charming your guests and tantalizing their taste buds.

  • Fresh Fruit Salad: A medley of vibrant seasonal fruits like strawberries, blueberries, and kiwis enhance the refreshing flavors of the cupcakes while adding a burst of color to your table.
  • Minty Limeade: The zesty zing of limeade complements the tartness of the cupcakes, creating a harmonious pairing that refreshes and delights.
  • Creamy Vanilla Ice Cream: A scoop of vanilla ice cream brings extra creaminess, offering a delightful contrast to the cupcake's rich, cheesecake texture.
  • Chocolate-Covered Almonds: These nutty treats add a satisfying crunch and a touch of richness, making for a perfect contrast against the fruity notes of the cheesecake.
  • Mini Cheesecake Bites: For dessert lovers, serving mini cheesecake bites alongside will only emphasize the creamy indulgence and leave them craving more.
  • Sparkling Water with Lime: Lightly flavored sparkling water enhances the overall freshness, keeping the palate cleansed between bites.
  • Sliced Lemon Bars: The tartness of lemon bars offers a delightful contrast, and their bright citrus notes complement the lime in the cupcakes beautifully.

Elevate your dessert table by mixing and matching these ideas to create an unforgettable experience!

How to Store and Freeze Blackberry Lime Cheesecake Cupcakes

Refrigerator: Store these delicious Blackberry Lime Cheesecake Cupcakes covered tightly in the fridge for up to 5 days to keep them fresh and flavorful.

Freezer: For longer storage, individually wrap each cupcake in plastic wrap and freeze for up to 2 months. Thaw in the fridge before serving.

Serving Tips: Always serve chilled for the best taste experience. You can garnish with fresh blackberries right after thawing!

Note: Be sure to store them away from strong-smelling foods to prevent any flavor transfer during storage.

Blackberry Lime Cheesecake Cupcakes Recipe FAQs

How do I select the best blackberries?
Absolutely! Look for blackberries that are plump, shiny, and deep purple in color. Avoid those with dark spots or excessive softness, as they may be overripe. Fresh berries not only taste better but also enhance the appearance of your cupcakes.

What’s the best way to store leftover cupcakes?
Very! Store your Blackberry Lime Cheesecake Cupcakes in the refrigerator, tightly covered, for up to 5 days. This helps maintain their flavor and texture. I recommend using an airtight container to keep them fresh and avoid absorption of other fridge odors.

Can I freeze Blackberry Lime Cheesecake Cupcakes?
Definitely! To freeze, individually wrap each cupcake in plastic wrap and then place them in a freezer-safe bag or container. They can be frozen for up to 2 months. To enjoy, simply transfer them to the fridge for a few hours to thaw before serving. Remember, they should always be served chilled for the best experience!

What should I do if the cheesecake filling cracks during baking?
No need to worry! If your cupcakes crack, it might be due to overbaking or a rapid temperature change. To prevent this in the future, ensure your oven is fully preheated before baking and keep an eye on the baking time—look for slightly jiggly centers. You can also help maintain moisture in your oven by placing a pan of water inside while baking.

Are these cupcakes suitable for those with gluten allergies?
Absolutely! You can use gluten-free graham cracker crumbs for the crust. Make sure to check the labels for any other ingredients, like baking powder, to ensure they're gluten-free. This way, everyone can enjoy these delightful treats together!

Is there a way to adjust the sweetness of the cheesecake filling?
Yes! I often suggest tasting the mixture before adding all the sugar, especially if you're using extra sweet fruits. If you prefer a less sweet flavor, reduce the amount of sugar gradually until you achieve your desired taste. Just keep in mind that the sweetness should balance out with the acidity of the lime juice!

These answers should enrich your baking experience and help create perfect Blackberry Lime Cheesecake Cupcakes!

Blackberry Lime Cheesecake Cupcakes

Irresistibly Indulgent Blackberry Lime Cheesecake Cupcakes

Delight in the summer flavors of these Blackberry Lime Cheesecake Cupcakes, combining tangy lime and sweet blackberry in every bite.
Print Pin Rate
Course: Baking
Cuisine: Baking
Keyword: Baking
Prep Time: 15 minutes minutes
Cook Time: 30 minutes minutes
Total Time: 2 hours hours 45 minutes minutes
Servings: 12 cupcakes
Calories: 250kcal
Author: Emma Saviani

Ingredients

  • 1 ½ cups graham cracker crumbs
  • ½ cup melted butter
  • 8 oz cream cheese softened
  • ¾ cup granulated sugar
  • 3 large eggs
  • 1 teaspoon vanilla extract
  • ¼ cup fresh lime juice
  • 1 tablespoon lime zest
  • 1 cup blackberry puree fresh or frozen
  • Fresh blackberries for garnish

Instructions

  • Preheat the oven to 325°F (163°C) and line a muffin tin with paper liners.
  • Combine graham cracker crumbs and melted butter in a bowl, then press this mixture into the bottom of each liner. Bake for 8-10 minutes until slightly golden, then cool the crusts completely.
  • Beat cream cheese and granulated sugar in a mixing bowl until smooth and creamy.
  • Add large eggs one at a time, beating well after each addition.
  • Stir in vanilla extract, fresh lime juice, and lime zest.
  • Divide the batter evenly into the muffin cups with the pre-baked crust.
  • Spoon blackberry puree onto the batter and gently swirl it to create a marbled effect.
  • Bake for 18-20 minutes, or until the edges are set and the centers are slightly jiggly.
  • Cool the cupcakes completely in the tin before refrigerating for at least 2 hours.
  • Top with fresh blackberries just before serving.

Notes

  • Drizzle with honey for added sweetness!
  • Ensure cream cheese is at room temperature for a smooth filling.
  • Don't overbake; keep the center slightly jiggly.
  • Allow cupcakes to cool completely in the tin before refrigerating.
  • If going gluten-free, use gluten-free graham cracker crumbs.
  • These can be prepped ahead of time and stored for up to 5 days.

Nutrition

Serving: 1cupcake | Calories: 250kcal | Carbohydrates: 26g | Protein: 3g | Fat: 15g | Saturated Fat: 8g | Polyunsaturated Fat: 5g | Cholesterol: 50mg | Sodium: 150mg | Fiber: 1g | Sugar: 18g

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Ellie Monroe

I’m Ellie, a 54-year-old home cook who believes the best recipes come from the heart. At Heavenly Recipe, I share comforting classics, sweet treats, and simple meals that anyone can make, just like the ones passed down through my family.

More about me

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